sarkas.tools.observables.RadialDistributionFunction

class sarkas.tools.observables.RadialDistributionFunction

Radial Distribution Function.

Variables

• no_bins (int) – Number of bins.

• dr_rdf (float) – Size of each bin.

Methods

RadialDistributionFunction.__init__()
RadialDistributionFunction.calc_k_data()	Calculate and save Fourier space data.
RadialDistributionFunction.calc_kt_data([...])	Calculate Time dependent Fourier space quantities.
RadialDistributionFunction.compute()	Calculate the observable (and its autocorrelation function).
RadialDistributionFunction.compute_sum_rule_integrals(...)	Compute integrals of the RDF used in sum rules.
RadialDistributionFunction.create_dirs_filenames()
RadialDistributionFunction.from_dict(input_dict)	Update attributes from input dictionary.
RadialDistributionFunction.grab_sim_data([pva])	Read in particles data
RadialDistributionFunction.parse()	Grab the pandas dataframe from the saved csv file.
RadialDistributionFunction.parse_k_data()	Read in the precomputed Fourier space data.
RadialDistributionFunction.parse_kt_data([...])	Read in the precomputed time dependent Fourier space data.
RadialDistributionFunction.plot([scaling, ...])	Plot the observable by calling the pandas.DataFrame.plot() function and save the figure.
RadialDistributionFunction.pretty_print()	Print radial distribution function calculation parameters for help in choice of simulation parameters.
RadialDistributionFunction.read_pickle()	Read the observable's info from the pickle file.
RadialDistributionFunction.save_hdf()
RadialDistributionFunction.save_pickle()	Save the observable's info into a pickle file.
RadialDistributionFunction.setup(params[, ...])	Assign attributes from simulation's parameters.
RadialDistributionFunction.setup_init(params)	Assign Observables attributes and copy the simulation's parameters.
RadialDistributionFunction.setup_multirun_dirs()	Set the attributes postprocessing_dir and dump_dirs_list.
RadialDistributionFunction.time_stamp(...)	Print to screen the elapsed time of the calculation.
RadialDistributionFunction.update_args(**kwargs)	Update observable specific attributes and call update_finish() to save info.
RadialDistributionFunction.update_finish()	Update the slice_steps, CCF's and DSF's attributes, and save pickle file with observable's info.